Hierarchical Pathway Listing for Vibrio cholerae O1 biovar El Tor str. N16961

Table of Contents

• Metabolite Activation/Inactivation/Interconversion:Metabolite Activation
• Biosynthesis:Amino Acid Biosynthesis
• Biosynthesis:Aminoacyl-tRNA Charging
• Biosynthesis:Aromatic Compound Biosynthesis
• Biosynthesis:Carbohydrate Biosynthesis
• Biosynthesis:Carboxylic Acid Biosynthesis
• Biosynthesis:Cell Structure Biosynthesis
• Biosynthesis:Cofactor, Carrier, and Vitamin Biosynthesis
• Biosynthesis:Cyclitol Biosynthesis
• Biosynthesis:Fatty Acid and Lipid Biosynthesis
• Biosynthesis:Metabolic Regulator Biosynthesis
• Biosynthesis:Nucleoside and Nucleotide Biosynthesis
• Biosynthesis:Other Biosynthesis
• Biosynthesis:Amide, Amidine, Amine, and Polyamine Biosynthesis
• Biosynthesis:Polyprenyl Biosynthesis
• Biosynthesis:Secondary Metabolite Biosynthesis
• Biosynthesis:Storage Compound Biosynthesis
• Biosynthesis:Tetrapyrrole Biosynthesis
• Degradation/Utilization/Assimilation:Alcohol Degradation
• Degradation/Utilization/Assimilation:Amide, Amidine, Amine, and Polyamine Degradation
• Degradation/Utilization/Assimilation:Amino Acid Degradation
• Degradation/Utilization/Assimilation:C1 Compound Utilization and Assimilation
• Degradation/Utilization/Assimilation:Carbohydrate Degradation
• Degradation/Utilization/Assimilation:Carboxylic Acid Degradation
• Degradation/Utilization/Assimilation:Fatty Acid and Lipid Degradation
• Degradation/Utilization/Assimilation:Inorganic Nutrient Metabolism
• Degradation/Utilization/Assimilation:Nucleoside and Nucleotide Degradation
• Degradation/Utilization/Assimilation:Degradation/Utilization/Assimilation - Other
• Degradation/Utilization/Assimilation:Polymeric Compound Degradation
• Detoxification:8-oxo-GTP and 8-oxo-dGTP Detoxification
• Detoxification:Acid Resistance
• Detoxification:Reactive Oxygen Species Degradation
• Generation of Precursor Metabolites and Energy:Acetyl-CoA Biosynthesis
• Generation of Precursor Metabolites and Energy:Chemoautotrophic Energy Metabolism
• Generation of Precursor Metabolites and Energy:Electron Transfer Chains
• Generation of Precursor Metabolites and Energy:Entner-Doudoroff Pathways
• Generation of Precursor Metabolites and Energy:Fermentation
• Generation of Precursor Metabolites and Energy:Glycolysis
• Generation of Precursor Metabolites and Energy:Pentose Phosphate Pathways
• Generation of Precursor Metabolites and Energy:Respiration
• Generation of Precursor Metabolites and Energy:TCA cycle
• Generation of Precursor Metabolites and Energy
• Glycan Pathways:Lipopolysaccharide Biosynthesis
• Glycan Pathways:Polysaccharide Biosynthesis
• Glycan Pathways
• Macromolecule Modification:Nucleic Acid Processing
• Macromolecule Modification:Protein Modification
• Metabolic Clusters

Overview

This page presents some of the evidence used to determine which pathways are present in Vibrio cholerae O1 biovar El Tor str. N16961. For each pathway, we show

• A diagram (the pathway evidence glyph) summarizing the presence of enzymes for each reaction in the pathway
• The normalized pathway score computed for the pathway
• The total number of reactions in the pathway
• The number of pathway reactions which an enzyme is present in Vibrio cholerae O1 biovar El Tor str. N16961
• The number of those reactions that appear in other pathways in Vibrio cholerae O1 biovar El Tor str. N16961 (and hence are not unique to the particular pathway)
• The number of reactions designated in MetaCyc as key indicators for the presence of this pathway, for which enzymes are present in Vibrio cholerae O1 biovar El Tor str. N16961
• Whether this organism is within the taxonomic groups (if any) designated in MetaCyc as the taxonomic range of this pathway

Key to Pathway Evidence Glyph Edge Colors

	Enzyme present. An enzyme for this reaction has been identified in this organism
	Enzyme absent. An enzyme for this reaction has not been identified in this organism
	Unique reaction. This reaction is unique to this pathway in the MetaCyc database
	Enzyme present by hole filler. An enzyme for this reaction has been identified in this organism by the Pathway Hole Filler
	Orphan reaction. No sequenced enzyme from any domain of life is known for this reaction
	Key reaction. The reaction has been designated a key reaction of this pathway
	Spontaneous/other. Used for spontaneous reactions, and for lines that do not denote reactions (e.g., denoting repetition in polymerization pathways)

Pathway Summary Statistics

Fraction of genes devoted to metabolism	1079 of 3744 (29%)
Base pathways	260
Total reactions in the base pathways	880
Base pathway reactions that are pathway holes	52 (6%)
Base pathway reactions that are not pathway holes	828 (94%)

Metabolite Activation/Inactivation/Interconversion:Metabolite Activation

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
long-chain fatty acid activation		0.283	1	1	0	(none)	0 of 0	yes
sulfate activation for sulfonation		0.337	2	2	0	(none)	0 of 0	yes

Biosynthesis:Amino Acid Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
alanine racemization		0.322	1	1	0	(none)	0 of 0	yes
glycine biosynthesis I		0.231	1	1	0	(none)	0 of 0	yes
glycine biosynthesis IV		0.423	1	1	0	(none)	0 of 0	yes
L-alanine biosynthesis I		0.566	2	2	0	(none)	0 of 0	yes
L-alanine biosynthesis III		0.88	1	1	0	(none)	0 of 0	yes
L-asparagine biosynthesis I		0.88	1	1	0	(none)	0 of 0	yes
L-aspartate biosynthesis		0.239	1	1	0	(none)	0 of 0	yes
L-cysteine biosynthesis I		0.571	2	2	0	(none)	0 of 0	yes
L-glutamate biosynthesis I		0.254	2	2	0	(none)	0 of 0	yes
L-glutamine biosynthesis I		na	1	1	0	(none)	0 of 0	yes
L-histidine biosynthesis		1.0	10	10	0	(none)	0 of 0	yes
L-homoserine biosynthesis		1.0	3	3	0	(none)	0 of 0	yes
L-isoleucine biosynthesis I (from threonine)		1.0	7	5	0	(none)	1 of 1	yes
L-leucine biosynthesis		1.0	6	5	0	(none)	0 of 0	yes
L-lysine biosynthesis I		0.87	9	9	0	(none)	1 of 1	yes
L-methionine biosynthesis I		1.0	5	5	0	(none)	2 of 2	yes
L-methionine biosynthesis II		1.0	6	4	0	(none)	2 of 2	NO
L-ornithine biosynthesis I		0.479	5	5	0	(none)	1 of 1	yes
L-phenylalanine biosynthesis I		1.0	3	3	0	(none)	1 of 1	yes
L-proline biosynthesis I (from L-glutamate)		0.989	4	3	0	(none)	0 of 0	yes
L-serine biosynthesis I		1.0	3	3	0	(none)	0 of 0	yes
L-threonine biosynthesis		0.652	2	2	0	(none)	0 of 0	yes
L-tryptophan biosynthesis		1.0	6	6	0	(none)	0 of 0	yes
L-tyrosine biosynthesis I		1.0	3	3	0	(none)	1 of 1	yes
L-valine biosynthesis		1.0	4	4	0	(none)	0 of 0	yes

Biosynthesis:Aminoacyl-tRNA Charging

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
tRNA charging		1.0	21	21	0	(none)	0 of 0	yes

Biosynthesis:Aromatic Compound Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
2,3-dihydroxybenzoate biosynthesis		1.0	3	3	0	(none)	0 of 0	yes
3-(4-hydroxyphenyl)pyruvate biosynthesis		0.231	1	1	0	(none)	0 of 0	yes
4-aminobenzoate biosynthesis I		0.423	2	2	0	(none)	0 of 0	yes
4-aminobenzoate biosynthesis II		0.212	2	1	0	(none)	0 of 0	yes
4-hydroxybenzoate biosynthesis II (bacteria)		0.239	1	1	0	(none)	0 of 0	yes
benzoyl-CoA biosynthesis		0.587	3	3	0	(none)	0 of 0	yes

Biosynthesis:Carbohydrate Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
ADP-L-glycero-beta-D-manno-heptose biosynthesis		1.0	5	5	0	(none)	1 of 1	yes
CMP-3-deoxy-D-manno-octulosonate biosynthesis		1.0	5	4	0	(none)	1 of 1	yes
GDP-2-N-[(2R)-2,4-dihydroxybutanoyl]-alpha-D-perosamine biosynthesis		na	5	4	0	(none)	0 of 0	yes
GDP-D-perosamine biosynthesis		na	2	2	0	(none)	1 of 1	yes
GDP-mannose biosynthesis		1.0	4	4	0	(none)	0 of 0	yes
gluconeogenesis I		0.431	13	13	5	mixed acid fermentation Entner-Doudoroff pathway	0 of 0	yes
glycogen biosynthesis I (from ADP-D-Glucose)		1.0	4	4	0	(none)	1 of 1	yes
PRPP biosynthesis		0.88	1	1	0	(none)	0 of 0	yes
UDP-alpha-D-galactose biosynthesis		0.263	1	1	0	(none)	0 of 0	yes
UDP-alpha-D-glucose biosynthesis		0.244	2	2	0	(none)	0 of 0	yes
UDP-N-acetyl-alpha-D-mannosaminouronate biosynthesis		0.56	2	2	0	(none)	0 of 0	yes
UDP-N-acetyl-D-glucosamine biosynthesis I		1.0	5	5	0	(none)	0 of 0	yes

Biosynthesis:Carboxylic Acid Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
3-dehydroquinate biosynthesis I		0.88	2	2	0	(none)	0 of 0	yes
chorismate biosynthesis from 3-dehydroquinate		1.0	5	5	0	(none)	0 of 0	yes

Biosynthesis:Cell Structure Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
Kdo transfer to lipid IVA (Vibrio cholerae serogroup O1 El Tor)		0.44	2	2	0	(none)	0 of 0	yes
Kdo-lipid A biosynthesis (Vibrio cholerae serogroup O1 El Tor)		na	2	2	0	(none)	0 of 0	yes
lipid A modification (glycine addition)		na	3	3	0	(none)	0 of 0	yes
lipid IVA biosynthesis (Vibrio cholerae serogroup O1 El Tor)		1.0	6	6	0	(none)	0 of 0	yes
peptidoglycan maturation		0.293	13	7	1	peptidoglycan biosynthesis	0 of 0	yes
UDP-N-acetylmuramoyl-pentapeptide biosynthesis (Vibrio cholerae)		1.0	11	11	0	(none)	0 of 0	yes

Biosynthesis:Cofactor, Carrier, and Vitamin Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
2-carboxy-1,4-naphthoquinol biosynthesis		1.0	7	6	0	(none)	1 of 1	yes
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I		0.571	2	2	0	(none)	0 of 0	yes
adenosylcobalamin biosynthesis from adenosylcobinamide-GDP I		0.526	3	3	3	superpathway of adenosylcobalamin salvage from cobinamide I	1 of 1	yes
adenosylcobalamin salvage from cobalamin		1.0	5	3	0	(none)	0 of 0	yes
adenosylcobinamide-GDP salvage from cobinamide I		1.0	5	4	2	superpathway of adenosylcobalamin salvage from cobinamide I	0 of 0	yes
biotin biosynthesis from 8-amino-7-oxononanoate I		1.0	4	4	0	(none)	1 of 1	yes
bis(guanylyl molybdenum cofactor) biosynthesis		0.423	2	2	0	(none)	0 of 0	yes
bis(guanylyl molybdopterin) cofactor sulfurylation		0.293	3	1	0	(none)	0 of 0	yes
bis(guanylyl tungstenpterin) cofactor biosynthesis		0.88	1	1	0	(none)	0 of 0	yes
citrate lyase activation		0.437	5	3	0	(none)	0 of 0	yes
coenzyme A biosynthesis I (prokaryotic)		1.0	4	4	0	(none)	1 of 1	yes
cytochrome c biogenesis (system I type)		na	11	11	0	(none)	0 of 0	yes
demethylmenaquinol-8 biosynthesis I		0.88	1	1	0	(none)	0 of 0	yes
di-trans,poly-cis-undecaprenyl phosphate biosynthesis		0.88	2	2	0	(none)	0 of 0	yes
dipyrromethane cofactor biosynthesis		0.317	4	3	0	(none)	0 of 0	yes
flavin biosynthesis I (bacteria and plants)		1.0	9	9	0	(none)	1 of 1	yes
folate polyglutamylation		1.0	5	5	0	(none)	0 of 0	yes
folate transformations III		0.502	9	9	0	(none)	0 of 0	yes
guanylyl molybdenum cofactor biosynthesis		0.88	1	1	0	(none)	0 of 0	yes
heme b biosynthesis II (oxygen-independent)		1.0	4	4	0	(none)	1 of 1	yes
heme b biosynthesis V (aerobic)		1.0	4	4	0	(none)	1 of 1	yes
hydroxymethylpyrimidine salvage		0.292	2	2	0	(none)	0 of 0	yes
lipoate biosynthesis and incorporation I		0.601	2	2	0	(none)	0 of 0	yes
lipoate biosynthesis and incorporation II		0.876	2	2	0	(none)	1 of 1	yes
lipoate salvage I		0.353	2	2	0	(none)	0 of 0	yes
menaquinol-8 biosynthesis		0.88	1	1	0	(none)	0 of 0	yes
molybdenum cofactor biosynthesis		0.77	3	3	0	(none)	1 of 1	yes
molybdopterin biosynthesis		1.0	6	5	0	(none)	0 of 0	yes
NAD de novo biosynthesis I (from aspartate)		1.0	5	5	0	(none)	0 of 0	yes
NAD de novo biosynthesis IV (anaerobic)		1.0	6	6	0	(none)	0 of 0	yes
NAD phosphorylation and transhydrogenation		0.337	2	2	0	(none)	0 of 0	yes
NAD salvage pathway II (PNC IV cycle)		1.0	5	5	0	(none)	0 of 0	yes
NAD salvage pathway III (to nicotinamide riboside)		0.419	3	2	0	(none)	2 of 2	yes
NADP biosynthesis		0.251	1	1	0	(none)	0 of 0	yes
phosphopantothenate biosynthesis I		1.0	4	4	0	(none)	0 of 0	yes
pyridoxal 5'-phosphate biosynthesis I		1.0	7	7	0	(none)	0 of 0	yes
S-adenosyl-L-methionine salvage I		1.0	4	4	0	(none)	2 of 2	yes
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate		0.328	2	2	0	(none)	0 of 0	yes
thiamine diphosphate biosynthesis		0.601	2	2	1	thiamine diphosphate salvage II	0 of 0	yes
thiazole component of thiamine diphosphate biosynthesis I		0.408	6	5	0	(none)	0 of 0	yes
ubiquinol-8 biosynthesis (early decarboxylation)		0.5	8	8	0	(none)	1 of 1	yes
[2Fe-2S] iron-sulfur cluster biosynthesis		0.176	10	7	0	(none)	0 of 0	NO

Biosynthesis:Cyclitol Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
myo-inositol biosynthesis		0.715	2	1	0	(none)	1 of 1	yes

Biosynthesis:Fatty Acid and Lipid Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
(5Z)-dodecenoate biosynthesis I		0.835	6	6	0	(none)	2 of 2	yes
acyl-CoA hydrolysis		0.88	1	1	0	(none)	0 of 0	yes
acyl-[acyl-carrier protein] thioesterase pathway		0.88	1	1	0	(none)	0 of 0	yes
cardiolipin biosynthesis I		1.0	3	3	2	phosphatidylglycerol biosynthesis I (plastidic) phosphatidylglycerol biosynthesis II (non-plastidic)	1 of 1	yes
cardiolipin biosynthesis III		1.0	3	3	2	phosphatidylglycerol biosynthesis II (non-plastidic) phosphatidylglycerol biosynthesis I (plastidic)	1 of 1	yes
CDP-diacylglycerol biosynthesis I		1.0	4	4	0	(none)	0 of 0	yes
CDP-diacylglycerol biosynthesis II		1.0	4	4	0	(none)	0 of 0	yes
fatty acid biosynthesis initiation (type II)		1.0	3	3	0	(none)	1 of 1	yes
fatty acid elongation -- saturated		1.0	4	4	0	(none)	0 of 0	yes
gondoate biosynthesis (anaerobic)		0.66	4	3	0	(none)	1 of 1	yes
Kdo-lipid A biosynthesis (Vibrio cholerae serogroup O1 El Tor)		na	2	2	0	(none)	0 of 0	yes
lipid A modification (glycine addition)		na	3	3	0	(none)	0 of 0	yes
lipid IVA biosynthesis (Vibrio cholerae serogroup O1 El Tor)		1.0	6	6	0	(none)	0 of 0	yes
long-chain fatty acid activation		0.283	1	1	0	(none)	0 of 0	yes
oleate biosynthesis IV (anaerobic)		0.687	14	14	0	(none)	1 of 1	yes
palmitate biosynthesis II (type II fatty acid synthase)		na	31	31	0	(none)	1 of 1	yes
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)		0.756	9	9	0	(none)	3 of 3	yes
phosphatidylserine and phosphatidylethanolamine biosynthesis I		0.88	2	2	0	(none)	0 of 0	yes
stearate biosynthesis II (bacteria and plants)		0.604	6	6	0	(none)	0 of 0	yes

Biosynthesis:Metabolic Regulator Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
ppGpp metabolism		1.0	6	6	0	(none)	0 of 0	yes

Biosynthesis:Nucleoside and Nucleotide Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
5-aminoimidazole ribonucleotide biosynthesis I		1.0	5	5	4	superpathway of 5-aminoimidazole ribonucleotide biosynthesis	0 of 0	yes
5-aminoimidazole ribonucleotide biosynthesis II		1.0	5	5	5	superpathway of 5-aminoimidazole ribonucleotide biosynthesis	0 of 0	yes
adenine and adenosine salvage I		0.263	2	2	0	(none)	0 of 0	yes
adenine and adenosine salvage III		1.0	4	4	0	(none)	2 of 2	yes
adenine and adenosine salvage V		1.0	3	3	0	(none)	2 of 2	yes
adenosine deoxyribonucleotides de novo biosynthesis II		1.0	4	4	0	(none)	2 of 2	yes
adenosine ribonucleotides de novo biosynthesis		1.0	3	3	0	(none)	0 of 0	yes
CMP phosphorylation		0.88	2	2	0	(none)	0 of 0	yes
guanine and guanosine salvage I		0.353	2	2	0	(none)	0 of 0	yes
guanine and guanosine salvage II		0.212	2	1	0	(none)	0 of 0	yes
guanine and guanosine salvage III		0.88	1	1	0	(none)	0 of 0	yes
guanosine deoxyribonucleotides de novo biosynthesis II		1.0	4	4	0	(none)	2 of 2	yes
guanosine ribonucleotides de novo biosynthesis		1.0	4	4	0	(none)	0 of 0	yes
inosine-5'-phosphate biosynthesis I		1.0	6	6	0	(none)	3 of 3	yes
pyrimidine deoxyribonucleosides salvage		0.484	5	4	0	(none)	0 of 0	yes
pyrimidine deoxyribonucleotide phosphorylation		1.0	4	4	0	(none)	0 of 0	yes
pyrimidine deoxyribonucleotides de novo biosynthesis I		0.598	9	9	0	(none)	1 of 1	yes
pyrimidine nucleobases salvage I		0.88	1	1	0	(none)	0 of 0	yes
pyrimidine ribonucleosides salvage I		1.0	3	3	0	(none)	1 of 1	yes
UMP biosynthesis I		1.0	6	6	1	L-arginine biosynthesis I (via L-ornithine)	1 of 1	yes
UTP and CTP de novo biosynthesis		1.0	3	3	0	(none)	0 of 0	yes
xanthine and xanthosine salvage		0.601	2	2	0	(none)	0 of 0	yes

Biosynthesis:Other Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I		0.213	5	3	0	(none)	1 of 1	yes
8-amino-7-oxononanoate biosynthesis I		0.769	11	11	0	(none)	2 of 2	yes
glutathione biosynthesis		0.601	2	2	0	(none)	0 of 0	yes
glutathione-glutaredoxin redox reactions		0.423	2	1	0	(none)	0 of 0	yes
glutathione-peroxide redox reactions		0.293	3	1	0	(none)	0 of 0	yes
thioredoxin pathway		0.44	2	1	0	(none)	0 of 0	yes

Biosynthesis:Amide, Amidine, Amine, and Polyamine Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
cadaverine biosynthesis		0.239	1	1	0	(none)	0 of 0	yes
ectoine biosynthesis		1.0	5	5	0	(none)	1 of 1	yes
norspermidine biosynthesis		na	6	6	0	(none)	4 of 4	yes
putrescine biosynthesis I		0.337	2	2	0	(none)	0 of 0	yes
putrescine biosynthesis III		na	2	2	0	(none)	0 of 0	yes
spermidine biosynthesis II		na	4	4	0	(none)	2 of 2	yes

Biosynthesis:Polyprenyl Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
di-trans,poly-cis-undecaprenyl phosphate biosynthesis		0.88	2	2	0	(none)	0 of 0	yes
geranyl diphosphate biosynthesis		0.233	1	1	0	(none)	0 of 0	yes
octaprenyl diphosphate biosynthesis		0.88	1	1	0	(none)	0 of 0	yes
trans, trans-farnesyl diphosphate biosynthesis		0.395	2	2	0	(none)	1 of 1	yes

Biosynthesis:Secondary Metabolite Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
autoinducer AI-2 biosynthesis II (Vibrio)		0.429	6	2	0	(none)	0 of 0	yes
autoinducer CAI-1 biosynthesis		0.88	3	2	0	(none)	0 of 0	yes
methylerythritol phosphate pathway I		0.94	9	8	0	(none)	1 of 1	yes
preQ0 biosynthesis		1.0	4	4	0	(none)	0 of 0	yes

Biosynthesis:Storage Compound Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
polyhydroxybutanoate biosynthesis		0.551	3	3	0	(none)	1 of 1	yes

Biosynthesis:Tetrapyrrole Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
cytochrome c biogenesis (system I type)		na	11	11	0	(none)	0 of 0	yes
heme b biosynthesis II (oxygen-independent)		1.0	4	4	0	(none)	1 of 1	yes
heme b biosynthesis V (aerobic)		1.0	4	4	0	(none)	1 of 1	yes
siroheme biosynthesis		1.0	4	4	0	(none)	0 of 0	yes
tetrapyrrole biosynthesis I (from glutamate)		1.0	6	6	0	(none)	0 of 0	yes

Degradation/Utilization/Assimilation:Alcohol Degradation

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
ethanol degradation I		0.368	2	2	2	mixed acid fermentation	1 of 1	yes
glycerol degradation I		0.401	3	2	0	(none)	0 of 0	yes
glycerophosphodiester degradation		0.601	2	2	0	(none)	0 of 0	yes
mannitol degradation I		0.423	2	2	0	(none)	0 of 0	yes

Degradation/Utilization/Assimilation:Amide, Amidine, Amine, and Polyamine Degradation

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
4-aminobutanoate degradation I		0.161	2	1	0	(none)	0 of 0	yes
N-acetylglucosamine degradation I		0.302	2	2	0	(none)	0 of 0	yes

Degradation/Utilization/Assimilation:Amino Acid Degradation

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
D-serine degradation		0.423	3	1	0	(none)	0 of 0	yes
glycine cleavage		1.0	3	3	0	(none)	1 of 1	yes
L-alanine degradation IV		0.88	1	1	0	(none)	0 of 0	yes
L-arginine degradation II (AST pathway)		0.528	5	4	0	(none)	0 of 0	yes
L-arginine degradation III (arginine decarboxylase/agmatinase pathway)		0.337	2	2	0	(none)	0 of 0	yes
L-asparagine degradation I		0.423	1	1	0	(none)	0 of 0	yes
L-aspartate degradation I		0.239	1	1	0	(none)	0 of 0	yes
L-aspartate degradation II (aerobic)		0.195	3	2	0	(none)	0 of 0	yes
L-aspartate degradation III (anaerobic)		0.195	3	2	0	(none)	0 of 0	yes
L-citrulline degradation		0.401	3	2	1	L-arginine biosynthesis I (via L-ornithine)	1 of 1	yes
L-cysteine degradation III		0.44	2	2	0	(none)	0 of 0	yes
L-glutamate degradation I		0.251	1	1	0	(none)	0 of 0	yes
L-glutamate degradation II		0.281	2	2	0	(none)	0 of 0	yes
L-glutamine degradation I		0.225	1	1	0	(none)	0 of 0	yes
L-glutamine degradation II		0.88	1	1	0	(none)	0 of 0	yes
L-histidine degradation I		1.0	4	4	0	(none)	0 of 0	yes
L-phenylalanine degradation I (aerobic)		0.423	1	1	0	(none)	0 of 0	yes
L-proline degradation I		0.44	3	2	0	(none)	1 of 1	yes
L-serine degradation		0.263	3	1	0	(none)	0 of 0	yes
L-threonine degradation I		0.176	6	4	0	(none)	0 of 0	yes
L-threonine degradation II		0.581	2	2	0	(none)	0 of 0	yes
L-threonine degradation IV		0.325	2	2	1	mixed acid fermentation	0 of 0	yes
L-tryptophan degradation II (via pyruvate)		0.846	3	1	0	(none)	0 of 0	yes
L-tyrosine degradation I		0.925	5	4	0	(none)	0 of 0	yes

Degradation/Utilization/Assimilation:C1 Compound Utilization and Assimilation

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
formaldehyde oxidation VII (THF pathway)		0.932	4	3	0	(none)	0 of 0	yes
formate assimilation into 5,10-methylenetetrahydrofolate		1.0	3	3	0	(none)	1 of 1	yes
reductive glycine pathway of autotrophic CO2 fixation		0.165	9	6	1	mixed acid fermentation pyruvate fermentation to acetate IV	0 of 0	yes

Degradation/Utilization/Assimilation:Carbohydrate Degradation

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
2-deoxy-alpha-D-ribose 1-phosphate degradation		1.0	3	3	1	mixed acid fermentation	0 of 0	yes
chitin degradation II (Vibrio)		1.0	6	6	0	(none)	1 of 1	yes
chitin derivatives degradation		1.0	9	7	0	(none)	0 of 0	yes
chitobiose degradation		0.44	2	2	0	(none)	0 of 0	yes
D-galactose degradation I (Leloir pathway)		1.0	5	5	0	(none)	0 of 0	yes
fructose degradation		0.88	1	1	0	(none)	0 of 0	yes
glycerol degradation I		0.401	3	2	0	(none)	0 of 0	yes
glycerophosphodiester degradation		0.601	2	2	0	(none)	0 of 0	yes
glycogen degradation II		0.401	6	5	0	(none)	0 of 0	yes
mannitol degradation I		0.423	2	2	0	(none)	0 of 0	yes
melibiose degradation		0.88	1	1	0	(none)	0 of 0	yes
N-acetylglucosamine degradation I		0.302	2	2	0	(none)	0 of 0	yes
N-acetylneuraminate and N-acetylmannosamine degradation I		0.432	4	4	0	(none)	0 of 0	yes
ribose phosphorylation		1.0	2	2	0	(none)	1 of 1	yes
trehalose degradation I (low osmolarity)		0.715	2	2	0	(none)	1 of 1	yes

Degradation/Utilization/Assimilation:Carboxylic Acid Degradation

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
2-methylcitrate cycle II		1.0	6	6	0	(none)	1 of 1	yes
acetate conversion to acetyl-CoA		0.239	1	1	0	(none)	0 of 0	yes
citrate degradation		0.423	2	2	0	(none)	0 of 0	yes
D-gluconate degradation		0.322	1	1	0	(none)	0 of 0	yes
L-ascorbate degradation I (bacterial, anaerobic)		0.492	5	5	0	(none)	1 of 1	yes
pyruvate decarboxylation to acetyl CoA I		1.0	3	3	0	(none)	1 of 1	yes

Degradation/Utilization/Assimilation:Fatty Acid and Lipid Degradation

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
fatty acid beta-oxidation I (generic)		0.706	7	7	0	(none)	0 of 0	yes
oleate beta-oxidation		1.0	35	35	0	(none)	0 of 0	yes
triacylglycerol degradation		0.477	3	1	0	(none)	1 of 1	yes

Degradation/Utilization/Assimilation:Inorganic Nutrient Metabolism

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
2-aminoethylphosphonate degradation I		1.0	3	3	1	mixed acid fermentation	1 of 1	yes
ammonia assimilation cycle III		0.899	3	3	0	(none)	0 of 0	yes
L-cysteine degradation III		0.44	2	2	0	(none)	0 of 0	yes
L-glutamine biosynthesis I		na	1	1	0	(none)	0 of 0	yes
polyphosphate metabolism		0.88	2	2	0	(none)	0 of 0	yes
sulfate activation for sulfonation		0.337	2	2	0	(none)	0 of 0	yes
thiosulfate disproportionation IV (rhodanese)		0.88	1	1	0	(none)	0 of 0	yes
thiosulfate oxidation III (multienzyme complex)		0.176	5	1	0	(none)	0 of 0	yes

Degradation/Utilization/Assimilation:Nucleoside and Nucleotide Degradation

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
adenosine nucleotides degradation II		0.352	5	3	0	(none)	1 of 1	yes
adenosine nucleotides degradation III		0.88	1	1	0	(none)	0 of 0	yes
guanosine nucleotides degradation III		0.151	4	2	0	(none)	0 of 0	yes
inosine 5'-phosphate degradation		0.267	4	3	0	(none)	0 of 0	yes
purine deoxyribonucleosides degradation I		1.0	4	4	0	(none)	0 of 0	yes
purine ribonucleosides degradation		1.0	6	6	0	(none)	0 of 0	yes
pyrimidine deoxyribonucleosides degradation		1.0	3	3	0	(none)	0 of 0	yes
pyrimidine deoxyribonucleotides dephosphorylation		0.388	3	2	0	(none)	0 of 0	yes
pyrimidine ribonucleosides degradation		0.51	2	2	0	(none)	1 of 1	yes
S-methyl-5'-thioadenosine degradation IV		0.423	1	1	0	(none)	0 of 0	yes
UTP and CTP dephosphorylation I		0.232	7	5	0	(none)	0 of 0	yes

Degradation/Utilization/Assimilation:Degradation/Utilization/Assimilation - Other

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
peptidoglycan recycling I		1.0	14	14	0	(none)	1 of 1	yes

Degradation/Utilization/Assimilation:Polymeric Compound Degradation

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
chitin degradation II (Vibrio)		1.0	6	6	0	(none)	1 of 1	yes
chitin derivatives degradation		1.0	9	7	0	(none)	0 of 0	yes
glycogen degradation II		0.401	6	5	0	(none)	0 of 0	yes

Detoxification:8-oxo-GTP and 8-oxo-dGTP Detoxification

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
8-oxo-(d)GTP detoxification I		0.44	4	2	0	(none)	0 of 0	yes

Detoxification:Acid Resistance

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
arginine dependent acid resistance		0.251	1	1	0	(none)	0 of 0	yes
cadaverine biosynthesis		0.239	1	1	0	(none)	0 of 0	yes

Detoxification:Reactive Oxygen Species Degradation

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
superoxide radicals degradation		0.423	2	2	2	reactive oxygen species degradation	0 of 0	yes

Generation of Precursor Metabolites and Energy:Acetyl-CoA Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
pyruvate decarboxylation to acetyl CoA I		1.0	3	3	0	(none)	1 of 1	yes

Generation of Precursor Metabolites and Energy:Chemoautotrophic Energy Metabolism

Pathway

Pathway Glyph

Pathway Score

Total Rxns

Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961

Rxns Present in Other Pwys

Other Pwys

Key Rxns Present

In Taxonomic Range?

Links

Generation of Precursor Metabolites and Energy:Electron Transfer Chains

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
aerobic respiration I (cytochrome c)		1.0	3	3	0	(none)	0 of 0	yes
NADH to cytochrome bo oxidase electron transfer II		0.253	2	1	0	(none)	0 of 0	yes
proline to cytochrome bo oxidase electron transfer		0.562	2	1	0	(none)	0 of 0	yes

Generation of Precursor Metabolites and Energy:Entner-Doudoroff Pathways

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
Entner-Doudoroff shunt		0.562	2	2	0	(none)	0 of 0	yes

Generation of Precursor Metabolites and Energy:Fermentation

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
acetate and ATP formation from acetyl-CoA I		0.228	2	2	2	mixed acid fermentation pyruvate fermentation to acetate IV	0 of 0	yes
acetate and ATP formation from acetyl-CoA III		0.239	1	1	0	(none)	0 of 0	yes
L-threonine degradation I		0.176	6	4	0	(none)	0 of 0	yes
pyruvate fermentation to (R)-acetoin II		0.856	2	2	0	(none)	1 of 1	yes
pyruvate fermentation to acetate II		1.0	3	3	3	mixed acid fermentation pyruvate fermentation to acetate IV superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass	1 of 1	yes
pyruvate fermentation to ethanol I		0.867	3	3	3	mixed acid fermentation pyruvate fermentation to acetate IV	0 of 0	yes

Generation of Precursor Metabolites and Energy:Glycolysis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
glycolysis		0.442	12	11	5	mixed acid fermentation Entner-Doudoroff pathway	0 of 0	yes

Generation of Precursor Metabolites and Energy:Pentose Phosphate Pathways

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
pentose phosphate pathway (non-oxidative branch) I		1.0	5	5	0	(none)	1 of 1	yes
pentose phosphate pathway (oxidative branch) I		1.0	3	3	2	superpathway of glycolysis and the Entner-Doudoroff pathway Entner-Doudoroff pathway	0 of 0	yes

Generation of Precursor Metabolites and Energy:Respiration

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
aerobic respiration I (cytochrome c)		1.0	3	3	0	(none)	0 of 0	yes
NADH to cytochrome bo oxidase electron transfer II		0.253	2	1	0	(none)	0 of 0	yes
proline to cytochrome bo oxidase electron transfer		0.562	2	1	0	(none)	0 of 0	yes

Generation of Precursor Metabolites and Energy:TCA cycle

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
TCA cycle		0.48	9	9	6	mixed acid fermentation	1 of 1	yes

Generation of Precursor Metabolites and Energy

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
2-oxoglutarate decarboxylation to succinyl-CoA		1.0	3	3	0	(none)	1 of 1	yes
ATP biosynthesis		0.88	1	1	0	(none)	0 of 0	yes
biotin-carboxyl carrier protein assembly		1.0	4	3	0	(none)	0 of 0	yes
glyoxylate cycle		1.0	6	6	4	mixed acid fermentation	2 of 2	yes
NADH repair (prokaryotes)		0.927	4	2	0	(none)	1 of 1	yes
NADPH repair (prokaryotes)		0.927	4	2	0	(none)	1 of 1	yes

Glycan Pathways:Lipopolysaccharide Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
Kdo transfer to lipid IVA (Vibrio cholerae serogroup O1 El Tor)		0.44	2	2	0	(none)	0 of 0	yes
Kdo-lipid A biosynthesis (Vibrio cholerae serogroup O1 El Tor)		na	2	2	0	(none)	0 of 0	yes
lipid A modification (glycine addition)		na	3	3	0	(none)	0 of 0	yes
lipid IVA biosynthesis (Vibrio cholerae serogroup O1 El Tor)		1.0	6	6	0	(none)	0 of 0	yes

Glycan Pathways:Polysaccharide Biosynthesis

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
glycogen biosynthesis I (from ADP-D-Glucose)		1.0	4	4	0	(none)	1 of 1	yes

Glycan Pathways

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
chitin degradation II (Vibrio)		1.0	6	6	0	(none)	1 of 1	yes
glycogen degradation II		0.401	6	5	0	(none)	0 of 0	yes

Macromolecule Modification:Nucleic Acid Processing

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
5-(methoxycarbonylmethoxy)uridine biosynthesis		0.587	3	3	0	(none)	0 of 0	yes
N6-L-threonylcarbamoyladenosine37-modified tRNA biosynthesis		0.88	2	2	0	(none)	0 of 0	yes
queuosine biosynthesis I (de novo)		1.0	4	4	0	(none)	0 of 0	yes
tRNA processing		1.0	10	10	0	(none)	0 of 0	yes
tRNA-uridine 2-thiolation		0.32	8	8	0	(none)	0 of 0	yes

Macromolecule Modification:Protein Modification

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
5-oxo-L-proline metabolism		0.293	5	1	0	(none)	0 of 0	yes
acyl carrier protein activation		0.423	1	1	0	(none)	0 of 0	yes
acyl carrier protein metabolism		0.652	2	2	0	(none)	0 of 0	yes
cytochrome c biogenesis (system I type)		na	11	11	0	(none)	0 of 0	yes
lipoprotein posttranslational modification		0.629	7	6	0	(none)	2 of 2	yes
N-end rule pathway I (prokaryotic)		0.88	2	2	0	(none)	0 of 0	yes

Metabolic Clusters

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Vibrio cholerae O1 biovar El Tor str. N16961	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
8-oxo-(d)GTP detoxification I		0.44	4	2	0	(none)	0 of 0	yes
N-end rule pathway I (prokaryotic)		0.88	2	2	0	(none)	0 of 0	yes
pyrimidine deoxyribonucleotide phosphorylation		1.0	4	4	0	(none)	0 of 0	yes
pyrimidine deoxyribonucleotides de novo biosynthesis I		0.598	9	9	0	(none)	1 of 1	yes
pyrimidine deoxyribonucleotides dephosphorylation		0.388	3	2	0	(none)	0 of 0	yes
tRNA charging		1.0	21	21	0	(none)	0 of 0	yes

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